| Atkinson, C. L., Alexiades, A. V., MacNeill, K. L., Encalada, A. C., Thomas, S., Flecker, A. S. 2019. Nutrient recycling by insect and fish communities in high-elevation tropical streams. Hydrobiologia. 838(1): 13-28. | Online |
| Fernandes Cunha, Davi Gasparini, Finkler, N. R., Gomez, N., Cochero, J., Donadelli, J. L., Saltarelli, W. A., Calijuri, Maria do Carmo, Poli Miwa, Adriana Cristina, Tromboni, F., Dodds, W. K., Boechat, I. G., Gucker, B., Thomas, S. 2019. Agriculture influ | Online |
| Simon, T. N., Binderup, A. J., Flecker, A. S., Gilliam, J. F., Marshall, M. C., Thomas, S., Travis, J., Reznick, D. N., Pringle, C. M. 2019. Landscape patterns in top-down control of decomposition: omnivory disrupts a tropical detrital-based trophic casca | Online |
| Tromboni, F., Lourenco-Amorim, C., Neres-Lima, V., Thomas, S., Silva-Araujo, M., Feijo-Lima, R., Silva-Junior, E. F., Heatherly, Thomas, II, Moulton, T. P., Zandona, E. 2019. Conversion of tropical forests to agriculture alters the accrual, stoichiometry, | Online |
| Atkinson, C., Rugenski, A., Encalada, A., Thomas, S., Landiera-Dabarca, A., Poff, L., Flecker, A. (2018). Determinants of food resource assimilation by stream insects along a tropical elevation gradient. Oecologia, 187(3). | |
| Feijo de Lima, r., Feijo-Lima, R., McCleay, S., Silva-Junior, E. F., Tromboni, F., Moulton, T. P., Zandona, E., Thomas, S. (2018). Quantitatively describing the downstream effects of an abrupt land cover transition: buffering effects of a forest remnant o | |
| Polato, N. R., Gill, B. A., Shah, A. A., Gray, M. M., Casner, K. L., Barthelet, A., Messer, P. W., Thomas, S., Guayasamin, J. M., Encalada, A. C., Kondratieff, B. C., Flecker, A. S., Poff, L., Ghalambor, C. K., Funk, W. C., Zamudio, K. R. (2018). Narrow t | |
| Tromboni, F., Thomas, S., Lourenço-Amorim, C., Gücker, B., Moulton, T. P., Silva-Junior, E. F., Feijó De Lima, R., Boëchat, I. G., Neres-Lima, V., Zandonà., E. (2018). Nutrient limitation and the stoichiometry of nutrient uptake in a tropical rainforest s | |
| Bookshire, E.N.J., S. Gerber, W. Greene, R.A. Jones, and S.A. Thomas. 2017. Plant uptake and stream chemistry set global bounds on nitrogen gas emissions from humid tropical forests. Geophysical Research Letters doi: 10.1002/2017GL072867 | Online |
| Loecke, T., Burgin, A., Riveros Iregui, D., Thomas, S., Ward, A., Davis, C., St.Clair, M. (2017). Weather whiplash in agricultural regions drives deterioration of water quality. Biogeochemistry, 133(1), 7-15. | Online |
| Norman, B., Whiles, M., Collins, S., Flecker, A., Hamilton, S., Thomas, S., Webster, J. (2017). Drivers of nitrogen transfer efficiencies in stream food webs across continents. Ecology. | Online |
| Shah, A. A., Gill, B. A., Encalada, A. C., Flecker, A. S., Funk, W. C., Guyasamin, J. M., Kondratieff, B. C., Poff, N. L., Thomas, S., Zamudio, K. R., Ghalambor, C. K. (2017). Climate variability predicts thermal limits of aquatic insects across elevation | Online |
| Simon, T. N., Bassar, R. D., Binderup, A. J., Flecker, A. S., Freeman, M. C., Gilliam, J. F., Marshall, M. C., Thomas, S., Travis, J., Reznick, D. N., Pringle, C. M. (2017). Experimental evidence that local adaptation in Trinidadian Guppies alters ecosyst | Online |
| Tank, J., Eugènia Martí, A. R., Dodds, W., Whiles, M., Thomas, S., Webster, J. (2017). Partitioning assimilatory nitrogen uptake in streams: an analysis of stable isotope tracer additions across continents. Ecological Monographs, 88, 120-138. | Online |
| Zandona, E., Dalton, C. M., El-Sabaawi, R. W., Howard, J. L., Marshall, M. C., Kilham, S. S., Reznick, D. N., Travis, J., Kohler, T. J., Flecker, A. S., Thomas, S., Pringle, C. M. (2017). Population variation in the trophic niche of the Trinidadian guppy | Online |
| Collins, S. M., Sparks, J. P., Thomas, S., Wheatley, S. M., Flecker, A. S. (2016). Increased Light Availability Reduces the Importance of Bacterial Carbon in Headwater Stream Food Webs. Ecosystems. 19: 396-410. | Online |
| Collins, S. M., Thomas, S., Heatherly, T. N., MacNeill, K., Leduc, A., Lamphere, B., Reznick, D. N., Pringle, C., Flecker, A. S. 2016. Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach. Ecol | Online |
| Gill, B. A., Kondratieff, B. C., Casner, K. L., Encalada, A. C., Flecker, A. S., Gannon, D. G., Ghalambor, C. K., Guaysamin, J. M., Poff, N. L., Simmons, M. P., Thomas, S., Zamudio, K. R., Funk, W. C. 2016. Cryptic species diversity reveals biogeographic | Online |
| Lessmann, J., Guayasamin, J. M., Casner, K. L., Flecker, A. S., Funk, W. C., Ghalambor, C. K., Gill, B. A., Jacome-Negrete, I., Kondratieff, B. C., Poff, N. L., Schreckinger, J., Thomas, S., Toral-Contreras, E., Zamudio, K. R., Encalada, A. C. 2016. Fresh | Online |
| Reynolds, K. N., Loecke, T. D., Burgin, A. J., Davis, C. A., Riveros - Iregui, D., Thomas, S., St Clair, M. A., Ward, A. S. 2016. Optimizing sampling strategies for riverine nitrate using high-frequency data in agricultural watersheds. Environmental Scien | Online |
| Bassar, R. D., Heatherly, T. N., Marshall, M. C., S. A., Flecker, A. S., Reznick, D. N. (2015). Population size-structure-dependent fitness and ecosystem consequences in Trinidadian guppies. Journal of Animal Ecology, 84, 955-968. | Online |
| Collins, S. M., Kohler, T. J., Thomas, S., Fetzer, W. W., Flecker, A. S. 2015. The importance of terrestrial subsidies in stream food webs varies. Oikoa Synthesising ecology. 125:674-685. | Online |
| El Sabaawi, R., Bassar, R. D., Raskowski, C., Marshall, M. C., Bryan, B. L., Thomas, S., Pringle, C., Reznick, D. N., Flecker, A. S. (2015). Intraspecific phenotypic differences in fish affect ecosystem processes as much as bottom – up factors. Oikos. 124 | Online |
| Goodale, C. L., Fredriksen, G., Wiess, M. S., McCalley, C. K., Sparks, J. P., Thomas, S. (2015). Soil processes drive seasonal variation in retention of 15N tracers in a deciduous forest catchment.
, 96(10), 2653–2668. | Online |
| Davis, C., Ward, A., Burgin, A., Loecke, T., Riveros Iregui, D., Schnoebelen, D., Just, C., Thomas, S., Weber, L., St.Clair, M. (2014). Antecedent moisture controls on stream nitrate flux in an agricultural watershed, Clear Creek, Iowa. Journal of Environ | |
| Brookshire, E. N., Thomas, S. (2013). Ecosystem Consequences of Tree Monodominance for Nitrogen Cycling in Lowland Tropical Forest. PLoS One, 8, e70491. | Online |
| Cheever, B. M., Webster, J. R., Bilger, E. E., Thomas, S. (2013). The relative importance of exogenous and substrate-derived nitrogen for microbial growth during leaf decomposition. Ecology, 94, 1614-1625. | Online |
| Auer, S., Lopez-Sepulcre, A., Heatherly, T. N., Kohler, T. J., Bassar, R. D., Thomas, S., Reznick, D. N. (2012). Life histories have a history: Effects of past and present conditions on adult somatic growth rates in wild Trinidadian guppies. Journal of An | Online |
| El-Sabaawi, R., Kohler, T. J., Zandona, E., Travis, J., Marshall, M. C., Thomas, S., Reznick, D. N., Walsh, M., Gilliam, J. F., Pringle, C. P., Flecker., A. S. (2012). Environmental and Organismal Predictors of Intraspecific Variation in Stoichiometry of | Online |
| Kohler, T. J., Heatherly, T. N., El-Sabaawi, R. W., Zandonà, E., Marshall, M. C., Flecker, A. S., Pringle, C. M., Reznick, D. N., Thomas, S. (2012). Flow, nutrients, and light availability influence Neotropical epilithon biomass and stoichiometry. Freshwa | |
| 2005 Newbold, J.D., S.A. Thomas, G.W. Minshall, C.E. Cushing, and T. Georgian. 2005. Deposition, benthic residence, and resuspension of fine organic particles in a mountain stream. Limnology and Oceanography. 50:1571-1580. | Online |
| Brookshire, J.D., H. M. Valett, S. A. Thomas, and J.R. Webster. 2005. Cycling of dissolved organic nitrogen in a forested headwater stream. Ecology. 86:2487-2496. | Online |
| Cross, W.F., J.P. Benstead, P.C. Frost, and S.A. Thomas. 2005. Applying principles of ecological stoichiometry to freshwater benthic ecology: recent progress and future potential. Freshwater Biology. 50:1985-1912. | |
| Schade, J., J. Espeleta, C.A. Klausmeier, M.E. McGroddy, S.A. Thomas, and L. Zhang. 2005. A conceptual framework for ecosystem stoichiometry: balancing resource supply and demand. Oikos. 109:40-51. | Online |
| Thomas S.A., T.V. Royer, E.B. Snyder, and J,C, Davis. 2005. Organic carbon spiraling in the Snake River, Idaho, USA. Aquatic Sciences. 67:424-433. | |
| Mulholland, P.J., H.M. Valett, J.R. Webster, S.A. Thomas, L. Cooper, S. Hamilton and B.J. Peterson. 2004. Stream denitrification and total nitrate uptake rates measured using a field 15N isotope tracer approach. Limnology and Oceanography 49(3) 809-820. | Online |
| Thomas, S.A. T.V. Royer, and G. W. Minshall. 2003. Assessing the Role of Marine Derived Nutrients in Idaho Streams. Nutrients in Salmonid Ecosystems; Sustaining Productivity and Biodiversity. American Fisheries Society, Syposium 34, 41-55. | |
| Thomas, S.A., H.M. Valett, P.J. Mulholland, and J.R. Webster. 2003. A regression approach to estimating reactive solute uptake in advective and transient storage zones of stream ecosystems. Advances in Water Resources. 26: 965-976. | Online |
| 2001 Thomas, S.A., H.M. Valett, P.J. Mulholland, and J.R. Webster, C.S. Fellows, C.N. Dahm, and C.G. Peterson. 2001. Nitrogen retention in headwater streams: the influence of groundwater - surface water interaction. TheScientificWorld 1:623-631. | |
| Thomas, S.A., J.D. Newbold, G.W. Minshall, T. Georgian, M.T. Monaghan, and C.E. Cushing. 2001. Transport and deposition of fine and very-fine organic particles in streams: implications for deposition mechanisms in turbulent environments. Limnology and Oce | |